03.08.2022

Two Post – doc positions at the Physical Optics and Biophotonics Group (vacancy filled)

  • ORGANISATION/COMPANY Institute of Physical Chemistry, Polish Academy of Sciences
  • RESEARCH FIELD Engineering, Physics › Optics
  • RESEARCHER PROFILE Recognised Researcher (R2)
  • APPLICATION DEADLINE 31/08/2022 12:00 – Europe/Brussels
  • LOCATION Poland › Warsaw
  • TYPE OF CONTRACT Temporary
  • JOB STATUS Full-time
  • HOURS PER WEEK 40
  • OFFER STARTING DATE 15/09/2022
  • REFERENCE NUMBER Recruitment No 21 /2022
  • EURAXESS link: Recruitment no. 21/2022 – Post – doc position | EURAXESS (europa.eu)

OFFER DESCRIPTION

We encourage applicants for Post – doc position in the Physical Optics and Biophotonics Group (POB) at Institute of Physical Chemistry PAS, Warsaw, Poland. The position is a part of the DAINA 2 „Objętościowa rekonstrukcja obrazowa z filtracją nadmiarowej informacji fazowej” project nr 2020/38/L/ST2/00556

The aim of this project is to introduce and experimentally verify the authors’ original description of physical processes related to the influence of light with partial spatial coherence on image reconstruction in the presence of optical heterogeneity. The proposed research works will allow for better understanding of physical and technical limitations for the case of imaging with partially spatially coherent light in systems with phase-sensitive (interferometric or holographic) detection.

In this fundamental research program, we would like to solve one of the most basic problems of optics, which is in-vivo microscopic imaging in biological samples. The objective of this project is to broaden our knowledge about the image formation process in the presence of highly scattering media.

The leading hypothesis in this project is the assumption that it is possible to introduce spatial modulation of the phase of spatially coherent light in a controlled way so as to achieve noninvasive three dimensional imaging reconstruction with quality of cross-sectional images comparable to that obtained by microscopy with spatially incoherent light.

We are looking for a person with at least 4 years of experience in optical laboratory lab environment (e.g. proper handling of bulk and fiber optical components), especially in creating and designing complex optical imaging setups. Successful candidate will also produce and maintain prototype software for control of peripheral equipment, data acquisition and data processing.

Responsibilities:

  • Construction, rearranging and examination of optical setups;
  • Measurement data analysis
  • Maintenance of software developed for measuring stands and prototype instruments
  • Automation of iterative computational adaptive optics,
  • Preparing of training datasets and develop neural networks for computational aberration correction,
  • Combining and applying computational aberration correction with dynamic light modulation,
  • Presenting progress on conferences, internal group meetings, and seminars.
  • Data analysis, writing reports and scientific publications
  • Cooperation with researchers, including communication with English-speaking colleagues

Benefits

  • a full contract (supported by NCN DAINA 2 „Objętościowa rekonstrukcja obrazowa z filtracją nadmiarowej informacji fazowej” grant nr 2020/38/L/ST2/00556 with prolongation option depending on project regulations and funds);
  • competitive salary (up to 11 000 PLN/month gross, depending on experience);
  • opportunity to work in interdisciplinary research department with strong support from chemistry and physics groups within the Institute;
  • collaboration with industrial and research partners.

Career development benefits:

– The successful candidate will be part of a highly experienced, multi-disciplinary team. He/She will have the possibility to broaden his/her knowledge and confront themselves with new tasks resulting in new technical solutions and applications. See also: http://pob-lab.com;

– Institute provides opportunity to participate in ERASMUS + programme.

Eligibility criteria

PhD in physics/engineering, specialized in optics

Selection process

Complete application should include the following documents:

• Curriculum vitae;

• Motivation letter;

• Scan or photocopy of the candidate’s PhD diploma;

• Description of achievements with an emphasis on projects, tasks dealt with, publications (if applicable) etc. related to the required substantial qualifications;

• Application deadline is on 31 August 2022, 12:00

• The incomplete applications will be not considered

• Successful candidates fulfilling the main eligibility criteria will be invited for an interview. The interview will be carried out between 5th – 7th September 2022 in IPC PAS or online.

The position will be awarded in accordance with the Employment policy of the Institute of Physical Chemistry PAS; Candidates may become acquainted with the employment policy at the IPC PAS on: https://ichf.edu.pl/files/csr/ipc-procedures.pdfThe Institute is also committed to employment equality (esp. European Charter for Researchers and the Code of Conduct for the Recruitment of Researchers) and welcomes applications from all qualified candidates fulfilling the requirements specified in this announcement.

• One candidate will be chosen.

• The results of the competition are made public.

• The results of the recruitment will be announced not later than 15th September 2022..

• If the top candidate does not sign the contract, due to the resignation, we reserve the right to choose the next candidate from the ranking list.

• Candidates who have been issued a negative opinion by the Competition Committee or candidates not selected for employment have the right to appeal against the results of the evaluation. The appeal shall be lodged with the Director of the Institute within 7 days from the date of receipt of the appropriate information. The decision of the Director of the Institute shall be final.

• Expected start date of working in-situ is 15th September 2022.

• Apply via email: rekrutacja@ichf.edu.pl; IMPORTANT: email title “Rekrutacja nr 21/2022”.

Additional comments

By submitting the application you consent to the processing of your personal data in the recruitment process.

The controller of your personal data is the Institute of Physical Chemistry of the Polish Academy of Sciences with its registered office in Warsaw, NIP: 5250008755 (the “Institute”). The Institute will process your data for the purpose of carrying out scientific and research activities, providing services and contact with the Institute, on the basis of a contract (in connection with the performance of the contract or in order to take action on your request before the contract is concluded – Article 6, paragraph 1, letter b) of GDPR), the legitimate interest of the Institute (Article 6, paragraph 1, letter f) of the GDPR) and legal provisions (Article 6, paragraph 1, letter c) of the GDPR) – depending on the circumstances.

You have the right to: request access to your data, receive a copy of it; rectify (correct) it; delete it; limit its processing; transfer it; lodge a complaint to the supervisory body; withdraw your consent for processing at any time (withdrawal of consent does not affect the lawfulness of the processing carried out prior to its withdrawal) or to lodge an objection to data processing. More information is available on the Institute’s website.

https://ichf.edu.pl/theme/ichf/pliki/RODO_klauzula_informacyjna.pdf

Required Research Experiences

  • RESEARCH FIELD Engineering
  • YEARS OF RESEARCH EXPERIENCE 4 – 10

Offer Requirements

  • REQUIRED EDUCATION LEVEL Physics: PhD or equivalent; Engineering: PhD or equivalent
  • REQUIRED LANGUAGES ENGLISH: Good

Skills/Qualifications

We are looking for a 1st person (co-investigator) who will be responsible for the most of theoretical work, computer simulations, programming of data acquisition and final data processing. She/he will also actively take part in conducting experiments, writing publications, patents etc. Coinvestigator is supposed to “generate” 40% of all results required to solve all three scientific tasks.

Development of dynamic spatial coherence theory, optimization of phase masks, creating algorithms, writing software for data acquisition and data processing, constructing initial optical set-up for experimental verification of the model.

 We are looking for a 2nd co-investigator who will be responsible for the most of experimental optical actions, construction of experimental instruments and performing all required optimization. She/he will lead in conducting experiments as well as writing publications, patents etc. Tasks: Construction of optical STOC-FD-FF-OCT set-ups, design and construction of systems using alternative spatial light modulators (multimode fibers), development of high speed imaging instruments using spatial phase modulators, development of multimodal instrumentation using STOC and standard microscope, conducting experiments and performing data analysis, preparation of phantoms.

Specific Requirements

  • PhD degree in physics/engineering (optics, automatics, informatics, electronics) obtained not earlier than 7 years before starting working for the project.
  • Computer programming advanced skills (Python, Matlab, C++),
  • Prior experience of implementing and using deep learning algorithms with TensorFlow, Keras API or any other equivalent library
  • Creativity and enthusiasm measured by the quality and number of projects, study record, internships
  • authorship in peer-reviewed publications and patents in which the Candidate participated and contributed.
  • Analytical thinking and critical problem solving skills
  • Excellent communication, organization and time management skills
  • Experimental experience in optical physics
  • Fluent in spoken and written English
  • Flexibility and ability to work in a multidisciplinary and multicultural research team
  • Direct experience with optical imaging is an asset
  • experience in customization and commercialization of optical setups
  • experience in medical application of devices based on optical solutions
28.07.2022

Research Assistant in Bioinformatics (vacancy filled)

OFFER DESCRIPTION

We have an open position for a Research Assistant in Bioinformatics with a focus on analyzing high-throughput single-cell transcriptomics/epigenomics data and developing new analytical and scalable computational tools. The candidate should have a background in math and computer sciences. No medical or genomics background is required; just the inclination to acquire such knowledge is a must.

More Information

ADDITIONAL INFORMATION

Benefits

1. Part- or full-time employment contract

2. Opportunity to extend to Ph.D. status after defending M.Sc. thesis

3. Opportunity to work in an innovative scientific environment

4. International cooperation with experienced researchers

5. International training at world-leading research institutes

6. Competitive salary (11000 PLN gross/ full time)

Eligibility criteria

Evaluation criteria:

1. Knowledge of bioinformatics, computer science, statistics, and machine learning

2. Prior experience in analyzing high-dimensional data

3. Experience with Python and/or R

4. Familiarity with Unix command-line tools

5. Competences of the candidate with respect to specific tasks in a research project

6. Previous educational/scientific achievements

Required documents:

1. CV (including list of projects)

2. Cover letter

3. Copy of MSc/ PhD diploma

7. Awards and distinctions

Selection process

Successful candidates fulfilling the main eligibility criteria and qualifications will be invited for an interview. Competition results shall be announced no earlier than 31.08.2022.

The International Centre for Translational Eye Research (Institute of Physical Chemistry PAS) is committed to employment equality (esp. European Charter for Researchers and the Code of Conduct for the Recruitment of Researchers) and welcomes applications from all qualified candidates fulfilling the requirements specified in this announcement.

Additional comments

The controller of your personal data is the International Centre for Translational Eye Research with its registered office in Warsaw, NIP: 1080023333 (the “ICTER”). ICTER will process your data for the purpose of carrying out scientific and research activities, providing services and contact with ICTER, on the basis of a contract (in connection with the performance of the contract or in order to take action on your request before the contract is concluded – Article 6, paragraph 1, letter b) of GDPR), the legitimate interest of ICTER (Article 6, paragraph 1, letter f) of the GDPR) and legal provisions (Article 6, paragraph 1, letter c) of the GDPR) – depending on the circumstances.

You have the right to: request access to your data, receive a copy of it; rectify (correct) it; delete it; limit its processing; transfer it; lodge a complaint to the supervisory body; withdraw your consent for processing at any time (withdrawal of consent does not affect the lawfulness of the processing carried out prior to its withdrawal) or to lodge an objection to data processing. More information is available on the Institute’s website.

Privacy Policy – ICTER.

REQUIREMENTS

Offer Requirements

REQUIRED EDUCATION LEVEL

  • Computer science: Master Degree or equivalent
  • Biological sciences: Master Degree or equivalent
  • Mathematics: Master Degree or equivalent
  • Physics: Master Degree or equivalent

Skills/Qualifications

  1. Ph.D./M.Sc degree in Bioinformatics, Computer Science, Math, Statistics, Physics or related quantitative discipline
  2. Strong background in computer science and math
  3. Background in statistics and machine learning
  4. Experience in analyzing high-dimensional data
  5. Knowledge of bioinformatics tools for analysis of genomics datasets is a strong plus
  6. Experience with python and/or R
  7. Familiarity with Unix command-line tools
  8. Excellent communication and organizational skills
  9. Ability to work independently and interact effectively in an interdisciplinary team
  10. Proficiency in English, both spoken and written

WORK LOCATION(S)

1 position(s) available at

International Centre for Translational Eye Research / Institute of Physical Chemistry, Polish Academy of Sciences, Poland, Mazovian, Warsaw 01-230, Skierniewicka 10A

RESEARCH FIELD

  • Biological sciences
  • Computer science
  • Mathematics
  • Physics

RESEARCHER PROFILE

First Stage Researcher (R1)

EURAXESS LINK: Research Assistant in Bioinformatics | EURAXESS (europa.eu)

APPLICATION DEADLINE 16/08/2022 13:00 – Europe/Brussels

  • LOCATION Poland › Warsaw
  • TYPE OF CONTRACT Temporary
  • JOB STATUS Full-time
  • HOURS PER WEEK 40
  • REFERENCE NUMBER: MCBO 65/2022
18.07.2022

PhD Student in the Optical Imaging Group (vacancy filled)

ICTER is looking for candidates with a Master degree experienced in physics, optics and photonics, optometry, and biomedical engineering data analysis. Candidates should be interested in translational research and the development of new therapies to cure blindness or other diseases. The PhD scholar will have a direct impact on lab development and its success in publishing in high impact factor journals. The person will be also responsible for performing dynamic research to create a competitive research group. The position will be assigned to Optical Imaging Group led by Prof. Maciej Wojtkowski, focused on developing new imaging techniques aiming at achieving speckle-less imaging based on full-field swept-source optical coherence tomography, for diagnosis, screening and monitoring of blinding eye diseases.

Benefits

We offer:

  1. Full-time employment contract
  2. Opportunity to work in an innovative scientific environment
  3. International cooperation with experienced researchers
  4. Competitive salary
  5. Access to well-staffed core facilities

Eligibility criteria

Application deadline: 18 August 2022, 12pm GMT+2

  1. CV (including a list of projects)
  2. Cover letter 
  3. Copy of MSc diploma ( or equivalent) or confirmed certificate of the expected date of obtaining the Masters’s degree. Please bear in mind that without a Master’s degree employment will not be possible.

Key evaluation criteria:

  • competences of the candidate with respect to specific tasks in a research project
  • previous educational/scientific achievements of the candidate
  • awards and distinctions of the candidate

Successful candidates fulfilling the main eligibility criteria and qualifications will be invited for an interview, which will be scheduled between 18 – 23 August 2022. Competition results shall be announced by the end of August 2022.

The International Centre for Translational Eye Research (Institute of Physical Chemistry PAS) is committed to employment equality (esp. European Charter for Researchers and the Code of Conduct for the Recruitment of Researchers) and welcomes applications from all qualified candidates fulfilling the requirements specified in this announcement.

Selection process

Please submit the required documents to:

icter_jobs@ichf.edu.pl

Kindly specify in the application topic: Recruitment no. MCBO 64/2022

Required Research Experiences

RESEARCH FIELD: Physics

YEARS OF RESEARCH EXPERIENCE: 1 – 4

Offer Requirements

REQUIRED LANGUAGES

ENGLISH: Excellent

Skills/Qualifications

Key responsibilities include:

  1. Development of measurement procedures for two-photon vision investigation
  2. Advancement of two-photon vision laboratory system
  3. Performing measurements with human subjects
  4. Statistical analysis of data
  5. Writing publications and reports
  6. Active participation in conferences

Profile of candidates/requirements:

  1. MSc diploma in physics, photonics, engineering, optometry or similar field at the moment of starting work within the Project
  2. A commitment to become a doctoral student within 6 months of starting work
  3. Knowledge on the structure and function of the human eye
  4. Experience in ophthalmic examination and laboratory measurements with humans
  5. Experience in experimental work in the field of optics and psychophysics
  6. Excellent communication and organizational skills
  7. Analytical and critical problem-solving skills mindset
  8. Proficiency in English, both spoken and written

Specific Requirements

 Required documents:

  1. CV (including list of projects)
  2. Cover letter
  3. Copy of MSc diploma (or equivalent) or confirmed certificate of the expected date of obtaining the Master’s degree. Please bear in mind that without a Master’s degree the employment will not be possible

Euraxess link: PhD Student | EURAXESS (europa.eu)

General information clause: https://icter.pl/wp-content/uploads/2021/12/General-Information-Clause-Recruitment.pdf

30.06.2022

Junior Postdoctoral Researcher in Structural Biology (vacancy filled)

OFFER DESCRIPTION

The International Centre for Translational Eye Research (ICTER) is a multi-investigator center for eye research as related to imaging and biochemical techniques to support advances in understanding the etiology and treatment of human blinding diseases. Further information on the research priorities and current expertise of our Center can be found at http://www.icter.pl.

The Institute seeks applicants with a PhD degree, and experience in biochemistry, molecular biology, or structural biology. Candidates should be interested in structural biology.

The Junior Postdoctoral Researcher will have a direct impact on lab development and its success in publishing in high impact factor journals. The person will be also responsible for performing dynamic research to create a competitive research group. The position will be assigned to the Integrated Structural Biology Group led by Dr. Humberto Fernandes, focused on elucidating the mechanisms of vision at an atomic and molecular level, with the ultimate goal to help developing therapeutics for the treatment of eye disorder(s), help prevent, or at least delaying, the onset of eye diseases.

Key responsibilities will include

  1. Planning and executing experiments and analyze the results
  2. Proactive approach to achieving objectives
  3. Conducting research tasks including: molecular cloning, protein production, purification, and characterization
  4. Creating protocols and R&D documentation.
  5. Applying for and leading independent projects.
  6. Helping other group members
  7. Actively participating in group meetings, institute seminars, and conferences
  8. Supervising students, and coordinating the work of PhD students
  9. Writing publications and reports, and help with the edition of scientific text and graphics for publication
  10. Handling bibliographic databases

Benefits

We offer

1. Full-time employment contract

2. Opportunity to work in an innovative scientific environment

3. International cooperation with experienced researchers

4. Competitive salary (11 000 PLN / ~2400 EUR gross/month, which is about 7 700 PLN net gross/month)

Eligibility criteria

The International Centre for Translational Eye Research (Institute of Physical Chemistry PAS) is committed to employment equality (esp. European Charter for Researchers and the Code of Conduct for the Recruitment of Researchers) and welcomes applications from all qualified candidates fulfilling the requirements specified in this announcement.

Selection process

Please submit required documents to icter_jobs@ichf.edu.pl by the 27th of July 2022. Kindly specify in the application topic: MCBO 62/2022.  The application should include CV (including a list of projects/publications), cover letter, photocopy of PhD diploma (if already issued) and name and addresses of two references.

Successful candidates fulfilling the selection criteria and qualifications will be invited for an interview (which will most likely take place in an online format on 03-05.08.2022). The competition results shall be announced by middle of August 2022. The competition may be extended until a suitable candidate who fulfills all requirements is found.

For more details about the position please visit (website/webpage address):www.icter.pl or contact Humberto Fernandes (hfernandes@ichf.edu.pl).

Additional comments

The controller of your personal data is the International Centre for Translational Eye Research with its registered office in Warsaw, NIP: 1080023333 (the “ICTER”). ICTER will process your data for the purpose of carrying out scientific and research activities, providing services and contact with ICTER, on the basis of a contract (in connection with the performance of the contract or in order to take action on your request before the contract is concluded – Article 6, paragraph 1, letter b) of GDPR), the legitimate interest of ICTER (Article 6, paragraph 1, letter f) of the GDPR) and legal provisions (Article 6, paragraph 1, letter c) of the GDPR) – depending on the circumstances.

You have the right to: request access to your data, receive a copy of it; rectify (correct) it; delete it; limit its processing; transfer it; lodge a complaint to the supervisory body; withdraw your consent for processing at any time (withdrawal of consent does not affect the lawfulness of the processing carried out prior to its withdrawal) or to lodge an objection to data processing. More information is available on the Institute’s website.

Privacy Policy – ICTER.

Offer Requirements

  • REQUIRED EDUCATION LEVELBiological sciences: PhD or equivalent
  • REQUIRED LANGUAGES: ENGLISH Excellent

Skills/Qualifications

  1. Holds a PhD (or will defend before the start date of employment) in biological sciences or related fields (obtained not earlier than 1st of January 2018).
  2. Has solid knowledge and documented laboratory hands-on experience in at least two of the following: molecular cloning, protein production and purification; biophysical characterization or structural biology; mammalian cell lines or cryo-EM. Expertise in molecular docking and/or molecular dynamics will be a plus
  3. High motivation, analytical skills, and independent thinking.
  4. Ability to work in a team, managing projects, and good organization of work.
  5. Very good written and oral communication skills in English
  6. A proactive approach to achieving tasks and objectives, good interpersonal skills, collaborative attitude
  7. A strong motivation for basic scientific research
  8. Good skills to plan and execute experiments
  9. Has the ability to communicate (in English) complex information clearly, orally, and in writing
  10. Has good presentation skills (ideally having presented during at least one international conference)
  11. Has published at least one publication as the first author in an international peer-reviewed journal

Specific Requirements

Key evaluation criteria

  • Creativity measured by the quality and number of scientific publications in which the candidate is the first author, corresponding author or a significant author and patent applications/patents and/or implementation;
  • Mobility in his/her scientific career (research internships, change in the scientific profile, internships and work in industry);
  • Creativity measured by the quality and number of research projects led and publications arising as a result of the implementation of these projects (if applicable);
  • Presented opinions via reference letters.

Euraxess link: Junior Postdoctoral Researcher in Structural Biology | EURAXESS (europa.eu)

21.06.2022

PhD student in Bioinformatics (vacancy filled)

We have an open position for a PhD student in machine learning/bioinformatics with a focus on the analysis of high-throughput single-cell transcriptomics/epigenomics data and developing new analytical and scalable computational tools thereof. The candidate should have a background in math and computer sciences. No medical or genomics background is required, just inclination to acquire such knowledge is a must.

The group is led by Dr Marcin Tabaka (PI) and leverages high-throughput single-cell RNA and ATAC sequencing to address fundamental questions in biomedical research (https://tabaka-lab.org).

Scientific discipline: Machine learning, bioinformatics, computational biology
Job type (employment contract/stipend): Employment contract
Number of job offers: 1
Remuneration/stipend amount/month: 6,600 PLN gross/month (4,700 net/month)
Position starts on: To be arranged with a candidate/ ASAP
Maximum period of contract: 31 December 2023
Institution: International Centre for Translational Eye Research (Institute of Physical Chemistry, Polish Academy of Sciences)
Project leader: Prof. Maciej Wojtkowski
Group leader: Dr Marcin Tabaka
Project title: International Centre for Translational Eye Research
The Project/Centre is funded within the International Research Agendas Programme of the Foundation for Polish Science. It is a collaboration between Institute of Physical Chemistry PAS and University College London, UK.

Project description: The International Centre for Translational Eye Research (ICTER) is a multi-investigator centre for eye research related to imaging, biochemical and genomics techniques to support advances in understanding the etiology and treatment of human blinding diseases. Further information on the research priorities and current expertise of our Centre can be found at http://www.icter.pl.

More information on the research agenda: https://www.icter.pl

Key responsibilities include:

  • Participation in research projects and attendance at team meetings to share results
  • Design and execute data analysis strategies of high-throughput single-cell genomics data
  • Develop and deploy new methods for high-dimensional data analysis and visualization
  • Collaborate with bioinformaticians and experimentalists
  • Design and lead independent projects
  • Prepare and write scientific papers
  • Active participation in conferences and grant applications
  • Supervision over students

Profile of candidates/requirements:

  • M.Sc. degree in Math, Statistics, Physics, Computer Science or related quantitative discipline
  • Background in statistics, machine and/or deep learning
  • Knowledge of at least one modern programming language.
  • Experience with python and/or R is a plus
  • Familiarity with Unix command-line tools
  • Excellent communication and organizational skills
  • Ability to work independently and interact effectively in an interdisciplinary team
  • Proficiency in English, both spoken and written
  • Good communication skills
  • Involvement in student and professional organizations, participation in conferences is a plus.
    Key evaluation criteria: 1. Familiarity with statistics, machine and/or deep learning
  • Knowledge of at least one modern programming language
  • Experience with Python and/or R
  • Familiarity with Unix command-line tools

Competences of the candidate with respect to specific tasks in a research project

Previous educational/scientific achievements

Awards and distinctions

Required documents:

  • CV (including list of projects)
  • Cover letter
  • Copy of MSc diploma or equivalent
  • Opinion about the candidate (1 reference)

We offer:

  • Full-time employment contract
  • Opportunity to work in an innovative scientific environment
  • International cooperation with experienced researchers
  • International training at world-leading research institutes
  • Competitive salary
  • Access to well-staffed core facilities

Please submit the required documents to: icter_jobs@ichf.edu.pl
Kindly specify in the application topic: Recruitment no. MCBO 61/2022
Application deadline: 22 July 2022

Successful candidates fulfilling the main eligibility criteria and qualifications will be invited for an interview. Competition results shall be announced no earlier than 15.08.2022.
The International Centre for Translational Eye Research (Institute of Physical Chemistry PAS) is committed to employment equality (esp. European Charter for Researchers and the Code of Conduct for the Recruitment of Researchers) and welcomes applications from all qualified candidates fulfilling the requirements specified in this announcement.
For more details about the position please visit (website/webpage address): www.icter.pl, https://scg-lab.com or contact Marcin Tabaka (mtabaka@ichf.edu.pl)
Euraxess job/stipend offer (in case of Ph.D., postdoc, leader and young leader positions): PhD student in Bioinformatics | EURAXESS (europa.eu)

The controller of your personal data is the International Centre for Translational Eye Research with its registered office in Warsaw, NIP: 1080023333 (the “ICTER”). ICTER will process your data for the purpose of carrying out scientific and research activities, providing services and contact with ICTER, on the basis of a contract (in connection with the performance of the contract or in order to take action on your request before the contract is concluded – Article 6, paragraph 1, letter b) of GDPR), the legitimate interest of ICTER (Article 6, paragraph 1, letter f) of the GDPR) and legal provisions (Article 6, paragraph 1, letter c) of the GDPR) – depending on the circumstances.
You have the right to: request access to your data, receive a copy of it; rectify (correct) it; delete it; limit its processing; transfer it; lodge a complaint to the supervisory body; withdraw your consent for processing at any time (withdrawal of consent does not affect the lawfulness of the processing carried out prior to its withdrawal) or to lodge an objection to data processing. More information is available on the Institute’s website.
Privacy Policy – ICTER.

Link to Euraxess: PhD student in Bioinformatics | EURAXESS (europa.eu).

21.06.2022

Research Assistant in Bioinformatics (vacancy filled)

We have an open position for a Research Assistant in machine learning/bioinformatics with a focus on the analysis of high-throughput single-cell transcriptomics/epigenomics data and developing new analytical and scalable computational tools thereof. The candidate should have a background in math and computer sciences. No medical or genomics background is required, just inclination to acquire such knowledge is a must.

Benefits

1. Part- or full-time employment contract

2. Opportunity to extend to Ph.D. status after defending M.Sc. thesis

3. Opportunity to work in an innovative scientific environment

4. International cooperation with experienced researchers

5. International training at world-leading research institutes

6. Competitive salary (6600 PLN gross/ full time)

Eligibility criteria

Required documents:

1. CV (including list of projects)

2. Cover letter

3. Document confirming a student status or BSc /MSc diploma

Evaluation criteria:

1. Familiarity with statistics and machine learning

2. Fluency in Python or R

3. Familiarity with Unix command-line tools

4. Competences of the candidate with respect to specific tasks in a research project

5. Awards and distinctions

Selection process

Successful candidates fulfilling the main eligibility criteria and qualifications will be invited for an interview. Competition results shall be announced no earlier than 12.08.2022.

The International Centre for Translational Eye Research (Institute of Physical Chemistry PAS) is committed to employment equality (esp. European Charter for Researchers and the Code of Conduct for the Recruitment of Researchers) and welcomes applications from all qualified candidates fulfilling the requirements specified in this announcement.

Offer Requirements

  • REQUIRED EDUCATION LEVELComputer science: Bachelor Degree or equivalentBiological sciences: Bachelor Degree or equivalent

Skills/Qualifications

1. B.Sc. or M.Sc. degree in Math, Statistics, Computer Science, Bioinformatics, Computational Biology or related quantitative discipline or student status

2. Background in statistics and machine learning

3. Fluency in Python or R

4. Familiarity with Unix command-line tools

5. Excellent communication and organizational skillsAbility to interact effectively in an interdisciplinary team

6.Proficiency in English, both spoken and written

7. Good communication skills

Please submit the required documents to: icter_jobs@ichf.edu.pl
Kindly specify in the application topic: Recruitment no. MCBO 59/2022
Application deadline: July 12, 2022
Successful candidates fulfilling the main eligibility criteria and qualifications will be invited for an interview. Competition results shall be announced no earlier than 12.08.2022.
The International Centre for Translational Eye Research (Institute of Physical Chemistry PAS) is committed to employment equality (esp. European Charter for Researchers and the Code of Conduct for the Recruitment of Researchers) and welcomes applications from all qualified candidates fulfilling the requirements specified in this announcement.
For more details about the position please visit (website/webpage address): www.icter.pl, https://www.tabaka-lab.org or contact Marcin Tabaka (mtabaka@ichf.edu.pl)

Additional comments

The controller of your personal data is the International Centre for Translational Eye Research with its registered office in Warsaw, NIP: 1080023333 (the “ICTER”). ICTER will process your data for the purpose of carrying out scientific and research activities, providing services and contact with ICTER, on the basis of a contract (in connection with the performance of the contract or in order to take action on your request before the contract is concluded – Article 6, paragraph 1, letter b) of GDPR), the legitimate interest of ICTER (Article 6, paragraph 1, letter f) of the GDPR) and legal provisions (Article 6, paragraph 1, letter c) of the GDPR) – depending on the circumstances.

You have the right to: request access to your data, receive a copy of it; rectify (correct) it; delete it; limit its processing; transfer it; lodge a complaint to the supervisory body; withdraw your consent for processing at any time (withdrawal of consent does not affect the lawfulness of the processing carried out prior to its withdrawal) or to lodge an objection to data processing. More information is available on the Institute’s website.

Privacy Policy – ICTER.

Euraxess link: Research Assistant in Bioinformatics | EURAXESS (europa.eu)

15.06.2022

Junior Software Specialist/ Student Intern (vacancy filled)

The IDoc Laboratory seeks a Junior Software Specialist with knowledge of modern C++ and an understanding of Object-Oriented programming and architecture design patterns related to it, as well as proficiency at CMake, GTest and Git usage, among other skills.

The Junior Software Specialist will have a direct impact in helping with the software development for controlling a robotic arm in real-time in a multi-device I/O exchange software architecture. The Junior Software Specialist will report directly to the IDoc Software Engineer, Krzysztof Gromada, who is in charge of the software development for the project.

Profile of candidates/requirements:

  1. Student in computer science, software engineering or related discipline
  2. Good knowledge of modern C++ including clean code practices
  3. Understanding of Object-Oriented Programming and architecture design patterns related to it
  4. Good to have knowledge of Python, C#
  5. Proficiency at CMake, GTest, Git usage
  6. Knowledge of Windows and/or Linux OS work principles, including communication sockets, library creation and management
  7. Basic knowledge in robotics and control engineering
  8. High English communication skills
  9. Good self-organization

Key responsibilities include:

  1. Development of software for robotic arm control
  2. Unit and functional test preparation using Gtest
  3. Code reviews
  4. Image processing pipelines preparation
  5. Work on DevOps – Adjusting Docker files, CMake, testing of different compilers setups, software debugging and profiling for high processing rate
  6. Performing other duties as directed

Key assesment criteria:

  1. Documented experience fitting the profile requirements
  2. Presented opinions via reference letters (if required)

Required documents:

  1. Curriculum vitae
  2. Cover/motivation letter
  3. Name and email of 2 referees

We offer:

  1. Individual Scholarship paid by the Foundation for Polish Science. *The scholarship is treated as financial support for the project participant and paid by the Foundation only, directly to the individual bank account of scholarship holder on the basis of separate agreement. The scholarship holder shall not receive remuneration from the project funds while receiving the scholarship.
  2. Opportunity to work in an innovative scientific environment
  3. International cooperation with experienced researchers
  4. Access to well-staffed core facilities

How to apply:

Please submit the required documents to: Icter_jobs@ichf.edu.pl and kgromada@ichf.edu.pl

Kindly specify in the application topic: Recruitment no. MCBO 60/2022

Application deadline: July 15, 2022

For more details about the position please contact: Krzysztof Gromada (kgromada@ichf.edu.pl)

Successful candidates fulfilling the main eligibility criteria and qualifications will be invited for an interview (which will most likely take place in an online (or in person, if possible) format in the second half of July 2022). Competition results shall be announced by late July 2022. The International Centre for Translational Eye Research (Institute of Physical Chemistry PAS) is committed to employment equality (esp. European Charter for Researchers and the Code of Conduct for the Recruitment of Researchers) and welcomes applications from all qualified candidates fulfilling the requirements specified in this announcement.

GDPR

09.06.2022

Post-doc position (vacancy filled)

Recruitment no. 21/2022

We encourage applicants for Post – doc  position in the Physical Optics and Biophotonics Group (POB) at Institute of Physical Chemistry PAS, Warsaw, Poland. The position is a part of the DAINA 2 „Objętościowa rekonstrukcja obrazowa z filtracją nadmiarowej informacji fazowej” project nr 2020/38/L/ST2/00556

The aim of this project is to introduce and experimentally verify the authors’ original description of physical processes related to the influence of light with partial spatial coherence on image reconstruction in the presence of optical heterogeneity. The proposed research works will allow for better understanding of physical and technical limitations for the case of imaging with partially spatially coherent light in systems with phase-sensitive (interferometric or holographic) detection.

In this fundamental research program, we would like to solve one of the most basic problems of optics, which is in-vivo microscopic imaging in biological samples. The objective of this project is to broaden our knowledge about the image formation process in the presence of highly scattering media.

The leading hypothesis in this project is the assumption that it is possible to introduce spatial modulation of the phase of spatially coherent light in a controlled way so as to achieve noninvasive three dimensional imaging reconstruction with quality of cross-sectional images comparable to that obtained by microscopy with spatially incoherent light.

We are looking for a person with at least 4 years of experience in optical laboratory lab environment (e.g. proper handling of bulk and fiber optical components), especially in creating and designing complex optical imaging setups. Successful candidate will also produce and maintain prototype software for control of peripheral equipment, data acquisition and data processing.

Responsibilities:

  • Construction, rearranging and examination of optical setups;
  • Measurement data analysis
  • Maintenance of software developed for measuring stands and prototype instruments
  • Automation of iterative computational adaptive optics,
  • Preparing of training datasets and develop neural networks for computational aberration correction,
  • Combining and applying computational aberration correction with dynamic light modulation,
  • Presenting progress on conferences, internal group meetings, and seminars.
  • Data analysis, writing reports and scientific publications
  • Cooperation with researchers, including communication with English-speaking colleagues

Researcher Profile:

  • Recognised Researcher (R2): PhD holder or equivalent, not yet fully independent. Experienced Researcher with more than 4 years FTE research experience or has a doctoral degree

Research field (Please select main research field and sub research field (optional))

  • Physics
  • Optics
  • Engineering (sub research field: Biomedical engineering)

Type of Contract

  • Temporary

Job Status

  • Full time

Hours per Week: 40

Application Deadline: 10/07/2022 at 12:00

Envisaged Job Starting Date: 01.08.2022

How to Apply: E-mail ekrutacja@ichf.edu.pl

* competition for a scientific position under the statutory funds:

* notes of the type: “under reference number: ICHF 21/2022 (emails without this number will be not considered!)” should be placed in [Additional comments] (at the end of the form)

HIRING INFORMATION

Physical Optics and Biophotonics Group, Department of Physical Chemistry of Biological Systems.

Contact Person E-mail: asalamonczyk@ichf.edu.pl

Phone (ex. (+48) 987 654 1234)

Number of positions available: 2

REQUIREMENTS

Required Education Level

  • Main research field: Physics (sub research field: Optics). Engineering (sub research field: Biomedical engineering)
  • Level: PhD degree in physics/engineering (optics, automatics, informatics, electronics) obtained not earlier than 7 years before starting working for the project

Skills/Qualifications

We are looking for a 1st person (co-investigator) who will be responsible for the most of theoretical work, computer simulations, programming of data acquisition and final data processing. She/he will also actively take part in conducting experiments, writing publications, patents etc. Coinvestigator is supposed to “generate” 40% of all results required to solve all three scientific tasks.

Development of dynamic spatial coherence theory, optimization of phase masks, creating algorithms, writing software for data acquisition and data processing, constructing initial optical set-up for experimental verification of the model.

We are looking for a 2nd  co-investigator who will be responsible for the most of experimental optical actions, construction of experimental instruments and performing all required optimization. She/he will lead in conducting experiments as well as writing publications, patents etc. Tasks: Construction of optical STOC-FD-FF-OCT set-ups, design and construction of systems using alternative spatial light modulators (multimode fibers), development of high speed imaging instruments using spatial phase modulators, development of multimodal instrumentation using STOC and standard microscope, conducting experiments and performing data analysis, preparation of phantoms.

Specific Requirements:

  • Computer programming advanced skills (Python, Matlab, C++),
  • Prior experience of implementing and using deep learning algorithms with TensorFlow, Keras API or any other equivalent library
  • Creativity and enthusiasm measured by the quality and number of projects, study record, internships
  • authorship in peer-reviewed publications and patents in which the Candidate participated and contributed.
  • Analytical thinking and critical problem solving skills
  • Excellent communication, organization and time management skills
  • Experimental experience in optical physics
  • Fluent in spoken and written English
  • Flexibility and ability to work in a multidisciplinary and multicultural research team
  • Direct experience with optical imaging is an asset
  • experience in customization and commercialization of optical setups
  • experience in medical application of devices based on optical solutions

Required Languages

  • English
  • Level: Good

Required Research Experience

  • Research field: Engineering (sub research field: Biomedical engineering)
  • Years of Research Experience: 5-7

ADDITIONAL INFO

Benefits

a full contract (supported by NCN DAINA 2 „Objętościowa rekonstrukcja obrazowa z filtracją nadmiarowej informacji fazowejgrant nr 2020/38/L/ST2/00556 with prolongation option depending on project regulations and funds);

competitive salary (up to 11 000 PLN/month gross, depending on experience);

opportunity to work in interdisciplinary research department with strong support from chemistry and physics groups within the Institute;

collaboration with industrial and research partners.

Career development benefits

  • The successful candidate will be part of a highly experienced, multi-disciplinary team. He/She will have the possibility to broaden his/her knowledge and confront themselves with new tasks resulting in new technical solutions and applications. See also:  http://pob-lab.com
  • Institute provides opportunity to participate in ERASMUS + programme.

Eligibility criteria
PhD in physics/engineering, specialized in optics

Selection process

Complete application should include the following documents:

  • Curriculum vitae;
  • Motivation letter;
  • Scan or photocopy of the candidate’s PhD  diploma;
  • Description of achievements with an emphasis on projects, tasks dealt with, publications (if applicable) etc. related to the required substantial qualifications.

Application deadline is on 10 July 2022, 12:00

The incomplete applications will be not considered.

Successful candidates fulfilling the main eligibility criteria will be invited for an interview. The interview will be carried out between 11th – 17nd May 2022 in IPC PAS or online.

The position will be awarded in accordance with the Employment policy of the Institute of Physical Chemistry PAS; Candidates may become acquainted with the employment policy at the IPC PAS on:  https://ichf.edu.pl/files/csr/ipc-procedures.pdfThe Institute is also committed to employment equality (esp. European Charter for Researchers and the Code of Conduct for the Recruitment of Researchers) and welcomes applications from all qualified candidates fulfilling the requirements specified in this announcement.

  • One candidate will be chosen.
  • The results of the competition are made public.
  • The results of the recruitment will be announced not later than 31st July 2022.
    • If the top candidate does not sign the contract, due to the resignation, we reserve the right to choose the next candidate from the ranking list.
    • Candidates  who  have  been  issued  a  negative  opinion  by  the  Competition  Committee  or  candidates  not selected for employment have the right to appeal against the results of the evaluation. The appeal shall be  lodged  with  the  Director  of  the  Institute  within  7  days  from  the  date  of  receipt  of  the  appropriate information. The decision of the Director of the Institute shall be final.
    • Expected start date of working in-situ is 1st August 2022.
    • Apply via email: rekrutacja@ichf.edu.pl, IMPORTANT: email title “Rekrutacja nr 21/2022”.

Additional comments

By submitting the application you consent to the processing of your personal data in the recruitment process.

The controller of your personal data is the Institute of Physical Chemistry of the Polish Academy of Sciences with its registered office in Warsaw, NIP: 5250008755 (the “Institute”). The Institute will process your data for the purpose of carrying out scientific and research activities, providing services and contact with the Institute, on the basis of a contract (in connection with the performance of the contract or in order to take action on your request before the contract is concluded – Article 6, paragraph 1, letter b) of GDPR), the legitimate interest of the Institute (Article 6, paragraph 1, letter f) of the GDPR) and legal provisions (Article 6, paragraph 1, letter c) of the GDPR) – depending on the circumstances.

You have the right to: request access to your data, receive a copy of it; rectify (correct) it; delete it; limit its processing; transfer it; lodge a complaint to the supervisory body; withdraw your consent for processing at any time (withdrawal of consent does not affect the lawfulness of the processing carried out prior to its withdrawal) or to lodge an objection to data processing. More information is available on the Institute’s website.

https://ichf.edu.pl/theme/ichf/pliki/RODO_klauzula_informacyjna.pdf